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BMCBI
2007
136views more  BMCBI 2007»
13 years 7 months ago
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
Xiaoyu Chen, Mathieu Blanchette
HICSS
1994
IEEE
157views Biometrics» more  HICSS 1994»
13 years 12 months ago
A Protein Family Classification Method for Analysis of Large DNA Sequences
A method is described for identification and classification of proteins encoded in large DNA sequences. Previously, an automated system was introduced for the general detection of...
Steven Henikoff, Jorja G. Henikoff
BMCBI
2008
145views more  BMCBI 2008»
13 years 7 months ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...
CP
2006
Springer
13 years 11 months ago
Decomposition of Multi-operator Queries on Semiring-Based Graphical Models
Abstract. In the last decades, the Satisfiability and Constraint Satisfaction Problem frameworks were extended to integrate aspects such as uncertainties, partial observabilities, ...
Cédric Pralet, Thomas Schiex, Gérard...
BMCBI
2006
172views more  BMCBI 2006»
13 years 7 months ago
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
Background: The majority of peptide bonds in proteins are found to occur in the trans conformation. However, for proline residues, a considerable fraction of Prolyl peptide bonds ...
Jiangning Song, Kevin Burrage, Zheng Yuan, Thomas ...