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» A New Approach to Protein Structure Mining and Alignment
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JCB
2007
83views more  JCB 2007»
13 years 8 months ago
Evolutionary Networks in the Formatted Protein Sequence Space
In our recent work, a new approach to establish sequence relatedness, by walking through the protein sequence space, was introduced. The sequence space is built from 20 amino acid...
Zakharia M. Frenkel, Edward N. Trifonov
MICCAI
2003
Springer
14 years 9 months ago
Hierarchical Segmentation of Thin Structures in Volumetric Medical Images
We introduce a new method for segmentation of 3D medical data based on geometric variational principles. A minimal variance criterion is coupled with a geometric edge alignment mea...
Michal Holtzman-Gazit, Dorith Goldsher, Ron Kimmel
NAR
2000
84views more  NAR 2000»
13 years 8 months ago
SRPDB (Signal Recognition Particle Database)
The Signal Recognition Particle Database (SRPDB) at http://psyche.uthct.edu/dbs/SRPDB/SRPDB.html and http://bio.lundberg.gu.se/dbs/SRPDB/SRPDB. html assists in the better understa...
Christian Zwieb, Tore Samuelsson
ICDM
2008
IEEE
106views Data Mining» more  ICDM 2008»
14 years 2 months ago
Boosting Relational Sequence Alignments
The task of aligning sequences arises in many applications. Classical dynamic programming approaches require the explicit state enumeration in the reward model. This is often impr...
Andreas Karwath, Kristian Kersting, Niels Landwehr
BMCBI
2002
101views more  BMCBI 2002»
13 years 8 months ago
Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases
Background: Total sequence decomposition, using the web-based MASIA tool, identifies areas of conservation in aligned protein sequences. By structurally annotating these motifs, t...
Catherine H. Schein, Numan Özgün, Tadahi...