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» A New Approach to Protein Structure Mining and Alignment
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IJBRA
2006
111views more  IJBRA 2006»
13 years 8 months ago
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
BMCBI
2006
149views more  BMCBI 2006»
13 years 8 months ago
Curation of viral genomes: challenges, applications and the way forward
Background: Whole genome sequence data is a step towards generating the 'parts list' of life to understand the underlying principles of Biocomplexity. Genome sequencing ...
Urmila Kulkarni-Kale, Shriram Bhosle, G. Sunitha M...
EDBT
2008
ACM
160views Database» more  EDBT 2008»
13 years 10 months ago
Taxonomy-superimposed graph mining
New graph structures where node labels are members of hierarchically organized ontologies or taxonomies have become commonplace in different domains, e.g., life sciences. It is a ...
Ali Cakmak, Gultekin Özsoyoglu
ISBI
2009
IEEE
14 years 3 months ago
Robust Segmentation of Brain Structures in MRI
A novel method for the segmentation of brain structures combining registration-based and EM-based approaches is proposed. To address the issue of intensity variation within brain ...
Maria Murgasova, David Edwards, Joseph V. Hajnal, ...
BMCBI
2006
111views more  BMCBI 2006»
13 years 8 months ago
Using ESTs to improve the accuracy of de novo gene prediction
Background: ESTs are a tremendous resource for determining the exon-intron structures of genes, but even extensive EST sequencing tends to leave many exons and genes untouched. Ge...
Chaochun Wei, Michael R. Brent