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» A New Similarity Measure among Protein Sequences
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GCB
1997
Springer
77views Biometrics» more  GCB 1997»
14 years 1 months ago
Statistics of large scale sequence searching
Motivation: Database search programs such as FASTA, BLAST or a rigorous Smith–Waterman algorithm produce lists of database entries, which are assumed to be related to the query....
Rainer Spang, Martin Vingron
BMCBI
2006
114views more  BMCBI 2006»
13 years 9 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
BMCBI
2007
105views more  BMCBI 2007»
13 years 9 months ago
VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines
Background: Vaccine development in the post-genomic era often begins with the in silico screening of genome information, with the most probable protective antigens being predicted...
Irini A. Doytchinova, Darren R. Flower
BMCBI
2010
117views more  BMCBI 2010»
13 years 9 months ago
Properties and identification of antibiotic drug targets
Background: We analysed 48 non-redundant antibiotic target proteins from all bacteria, 22 antibiotic target proteins from E. coli only and 4243 non-drug targets from E. coli to id...
Tala Bakheet, Andrew J. Doig
ICDE
2002
IEEE
143views Database» more  ICDE 2002»
14 years 10 months ago
Discovering Similar Multidimensional Trajectories
We investigate techniques for analysis and retrieval of object trajectories in a two or three dimensional space. Such kind of data usually contain a great amount of noise, that ma...
Michail Vlachos, Dimitrios Gunopulos, George Kolli...