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» A New Similarity Measure among Protein Sequences
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APBC
2004
13 years 10 months ago
EMAGEN: An Efficient Approach to Multiple Whole Genome Alignment
Following advances in biotechnology, many new whole genome sequences are becoming available every year. A lot of useful information can be derived from the alignment and compariso...
Jitender S. Deogun, Jingyi Yang, Fangrui Ma
BMCBI
2010
74views more  BMCBI 2010»
13 years 9 months ago
A weighted q-gram method for glycan structure classification
Background: Glycobiology pertains to the study of carbohydrate sugar chains, or glycans, in a particular cell or organism. Many computational approaches have been proposed for ana...
Limin Li, Wai-Ki Ching, Takako Yamaguchi, Kiyoko F...
ICSM
2005
IEEE
14 years 2 months ago
The Conceptual Cohesion of Classes
While often defined in informal ways, software cohesion reflects important properties of modules in a software system. Cohesion measurement has been used for quality assessment, f...
Andrian Marcus, Denys Poshyvanyk
BMCBI
2007
97views more  BMCBI 2007»
13 years 9 months ago
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, hu
Background: The Affymetrix GeneChip technology uses multiple probes per gene to measure its expression level. Individual probe signals can vary widely, which hampers proper interp...
Rudi Alberts, Peter Terpstra, Menno Hardonk, Leoni...
BMCBI
2007
159views more  BMCBI 2007»
13 years 9 months ago
Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype
Background: A finite state machine manipulating information-carrying DNA strands can be used to perform autonomous molecular-scale computations at the cellular level. Results: We ...
Israel Mark Martínez-Pérez, Gong Zha...