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BMCBI
2007
127views more  BMCBI 2007»
13 years 7 months ago
Characterization and simulation of cDNA microarray spots using a novel mathematical model
Background: The quality of cDNA microarray data is crucial for expanding its application to other research areas, such as the study of gene regulatory networks. Despite the fact t...
Hye Young Kim, Seo Eun Lee, Min Jung Kim, Jin Il H...
RECOMB
2005
Springer
14 years 7 months ago
An Interaction-Dependent Model for Transcription Factor Binding
Transcriptional regulation is accomplished by several transcription factor proteins that bind to specific DNA elements in the relative vicinity of the gene, and interact with each ...
Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli
BMCBI
2007
105views more  BMCBI 2007»
13 years 7 months ago
Generating confidence intervals on biological networks
Background: In the analysis of networks we frequently require the statistical significance of some network statistic, such as measures of similarity for the properties of interact...
Thomas Thorne, Michael P. H. Stumpf
ICDE
2011
IEEE
258views Database» more  ICDE 2011»
12 years 11 months ago
SystemML: Declarative machine learning on MapReduce
Abstract—MapReduce is emerging as a generic parallel programming paradigm for large clusters of machines. This trend combined with the growing need to run machine learning (ML) a...
Amol Ghoting, Rajasekar Krishnamurthy, Edwin P. D....
IEEEPACT
2008
IEEE
14 years 1 months ago
Exploiting loop-dependent stream reuse for stream processors
The memory access limits the performance of stream processors. By exploiting the reuse of data held in the Stream Register File (SRF), an on-chip storage, the number of memory acc...
Xuejun Yang, Ying Zhang, Jingling Xue, Ian Rogers,...