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» A Repulsive Clustering Algorithm for Gene Expression Data
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BMCBI
2007
135views more  BMCBI 2007»
13 years 7 months ago
Measuring similarities between gene expression profiles through new data transformations
Background: Clustering methods are widely used on gene expression data to categorize genes with similar expression profiles. Finding an appropriate (dis)similarity measure is crit...
Kyungpil Kim, Shibo Zhang, Keni Jiang, Li Cai, In-...
IDEAL
2004
Springer
14 years 1 months ago
Visualisation of Distributions and Clusters Using ViSOMs on Gene Expression Data
Microarray datasets are often too large to visualise due to the high dimensionality. The self-organising map has been found useful to analyse massive complex datasets. It can be us...
Swapna Sarvesvaran, Hujun Yin
KDD
2006
ACM
156views Data Mining» more  KDD 2006»
14 years 8 months ago
Discovering significant OPSM subspace clusters in massive gene expression data
Order-preserving submatrixes (OPSMs) have been accepted as a biologically meaningful subspace cluster model, capturing the general tendency of gene expressions across a subset of ...
Byron J. Gao, Obi L. Griffith, Martin Ester, Steve...
SDM
2008
SIAM
123views Data Mining» more  SDM 2008»
13 years 9 months ago
Constrained Co-clustering of Gene Expression Data
In many applications, the expert interpretation of coclustering is easier than for mono-dimensional clustering. Co-clustering aims at computing a bi-partition that is a collection...
Ruggero G. Pensa, Jean-François Boulicaut
BIBE
2007
IEEE
155views Bioinformatics» more  BIBE 2007»
14 years 2 months ago
Partial Mixture Model for Tight Clustering in Exploratory Gene Expression Analysis
Abstract—In this paper we demonstrate the inherent robustness of minimum distance estimator that makes it a potentially powerful tool for parameter estimation in gene expression ...
Yinyin Yuan, Chang-Tsun Li