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» A Repulsive Clustering Algorithm for Gene Expression Data
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ICML
2005
IEEE
14 years 9 months ago
Active learning for sampling in time-series experiments with application to gene expression analysis
Many time-series experiments seek to estimate some signal as a continuous function of time. In this paper, we address the sampling problem for such experiments: determining which ...
Rohit Singh, Nathan Palmer, David K. Gifford, Bonn...
ICDM
2005
IEEE
215views Data Mining» more  ICDM 2005»
14 years 2 months ago
CLUGO: A Clustering Algorithm for Automated Functional Annotations Based on Gene Ontology
We address the issue of providing highly informative and comprehensive annotations using information revealed by the structured vocabularies of Gene Ontology (GO). For a target, a...
In-Yee Lee, Jan-Ming Ho, Ming-Syan Chen
ICDM
2006
IEEE
129views Data Mining» more  ICDM 2006»
14 years 3 months ago
Consensus Clustering for Detection of Overlapping Clusters in Microarray Data
Most clustering algorithms are partitional in nature, assigning each data point to exactly one cluster. However, several real world datasets have inherently overlapping clusters i...
Meghana Deodhar, Joydeep Ghosh
RECOMB
2006
Springer
14 years 9 months ago
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies
Abstract. Pharmacogenomics and clinical studies that measure the temporal expression levels of patients can identify important pathways and biomarkers that are activated during dis...
Naftali Kaminski, Ziv Bar-Joseph
BMCBI
2007
117views more  BMCBI 2007»
13 years 9 months ago
Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers
Background: Although prognostic biomarkers specific for particular cancers have been discovered, microarray analysis of gene expression profiles, supported by integrative analysis...
Xinan Yang, Xiao Sun