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» A Sequence Alignment Model Based on the Averaged Perceptron
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ICCAD
2002
IEEE
143views Hardware» more  ICCAD 2002»
14 years 4 months ago
A Markov chain sequence generator for power macromodeling
In macromodeling-based power estimation, circuit macromodels are created from simulations of synthetic input vector sequences. Fast generation of these sequences with all possible...
Xun Liu, Marios C. Papaefthymiou
RECOMB
2003
Springer
14 years 8 months ago
Haplotype reconstruction from SNP alignment
In this paper, we describe a method for statistical reconstruction of haplotypes from a set of aligned SNP fragments. We consider the case of a pair of homologous human chromosome...
Lei Li, Jong Hyun Kim, Michael S. Waterman
CVPR
2006
IEEE
14 years 10 months ago
Kernel-based Template Alignment
This paper introduces a novel kernel-based method for template tracking in video sequences. The method is derived for a general warping transformation, and its application to affi...
Igor Guskov
NAR
2006
107views more  NAR 2006»
13 years 7 months ago
CorGen - measuring and generating long-range correlations for DNA sequence analysis
CorGen is a web server that measures long-range correlations in the base composition of DNA and generates random sequences with the same correlation parameters. Long-range correla...
Philipp W. Messer, Peter F. Arndt
BMCBI
2005
106views more  BMCBI 2005»
13 years 7 months ago
SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution
Background: General protein evolution models help determine the baseline expectations for the evolution of sequences, and they have been extensively useful in sequence analysis an...
Andy Pang, Andrew D. Smith, Paulo A. S. Nuin, Elis...