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IPPS
2003
IEEE
14 years 27 days ago
Addressable Procedures for Logic and Arithmetic Operations with DNA Strands
In this paper, we consider addressable procedures with DNA strands for logic and arithmetic operations. Using a theoretical model for DNA computing, we first show a DNA represent...
Akihiro Fujiwara, Ken-ichi Matsumoto, Wei Chen
SODA
2008
ACM
108views Algorithms» more  SODA 2008»
13 years 9 months ago
Dimension augmentation and combinatorial criteria for efficient error-resistant DNA self-assembly
DNA self-assembly has emerged as a rich and promising primitive for nano-technology. Experimental and analytical evidence indicates that such systems are prone to errors, and acco...
Ho-Lin Chen, Ashish Goel, Chris Luhrs
NAR
2006
107views more  NAR 2006»
13 years 7 months ago
CorGen - measuring and generating long-range correlations for DNA sequence analysis
CorGen is a web server that measures long-range correlations in the base composition of DNA and generates random sequences with the same correlation parameters. Long-range correla...
Philipp W. Messer, Peter F. Arndt
DNA
2006
Springer
129views Bioinformatics» more  DNA 2006»
13 years 11 months ago
P Systems with Active Membranes Characterize PSPACE
P system is a natural computing model inspired by behavior of living cells and their membranes. We show that (semi-)uniform families of P systems with active membranes can solve i...
Petr Sosík, Alfonso Rodríguez-Pat&oa...
BMCBI
2007
247views more  BMCBI 2007»
13 years 7 months ago
A survey of DNA motif finding algorithms
Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
Modan K. Das, Ho-Kwok Dai