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» A cluster validity framework for genome expression data
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BMCBI
2007
130views more  BMCBI 2007»
13 years 7 months ago
Differential analysis for high density tiling microarray data
Background: High density oligonucleotide tiling arrays are an effective and powerful platform for conducting unbiased genome-wide studies. The ab initio probe selection method emp...
Srinka Ghosh, Heather A. Hirsch, Edward A. Sekinge...
IPPS
2007
IEEE
14 years 1 months ago
An Energy-Efficient Framework for Large-Scale Parallel Storage Systems
Huge energy consumption has become a critical bottleneck for further applying large-scale cluster systems to build new data centers. Among various components of a data center, sto...
Ziliang Zong, Matt Briggs, Nick O'Connor, Xiao Qin
BMCBI
2007
176views more  BMCBI 2007»
13 years 7 months ago
Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue
Background: Micro- and macroarray technologies help acquire thousands of gene expression patterns covering important biological processes during plant ontogeny. Particularly, fait...
Marc Strickert, Nese Sreenivasulu, Björn Usad...
KDD
2010
ACM
245views Data Mining» more  KDD 2010»
13 years 10 months ago
Flexible constrained spectral clustering
Constrained clustering has been well-studied for algorithms like K-means and hierarchical agglomerative clustering. However, how to encode constraints into spectral clustering rem...
Xiang Wang, Ian Davidson
BMCBI
2005
89views more  BMCBI 2005»
13 years 7 months ago
Theme discovery from gene lists for identification and viewing of multiple functional groups
Background: High throughput methods of the genome era produce vast amounts of data in the form of gene lists. These lists are large and difficult to interpret without advanced com...
Petri Pehkonen, Garry Wong, Petri Töröne...