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CCGRID
2004
IEEE
13 years 11 months ago
Learning Grid technologies in a project-based computer architecture course
This paper describes the integration of the grid topic within a Computer Architecture engineering course. Students are engaged in a project of design and evaluation of computing s...
Guillermo Vega-Gorgojo, Yannis A. Dimitriadis, Edu...
RECOMB
2008
Springer
14 years 7 months ago
CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads
A major hindrance to studies of microbial diversity has been that the vast majority of microbes cannot be cultured in the laboratory and thus are not amenable to traditional method...
Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, ...
BMCBI
2007
108views more  BMCBI 2007»
13 years 7 months ago
Design and implementation of a generalized laboratory data model
Background: Investigators in the biological sciences continue to exploit laboratory automation methods and have dramatically increased the rates at which they can generate data. I...
Michael C. Wendl, Scott Smith, Craig S. Pohl, Davi...
NAR
2011
198views Computer Vision» more  NAR 2011»
12 years 10 months ago
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralo
The growing availability of complete genomic sequences from diverse species has brought about the need to scale up phylogenomic analyses, including the reconstruction of large col...
Jaime Huerta-Cepas, Salvador Capella-Gutiér...
VLSISP
2010
119views more  VLSISP 2010»
13 years 2 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton