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» A graphical model for predicting protein molecular function
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SDM
2011
SIAM
307views Data Mining» more  SDM 2011»
12 years 10 months ago
Block-LDA: Jointly modeling entity-annotated text and entity-entity links
We present a model that improves entity entity link modeling in a mixed membership stochastic block model, by jointly modeling links with text about the entities that are linked i...
Ramnath Balasubramanyan, William W. Cohen
BMCBI
2008
97views more  BMCBI 2008»
13 years 8 months ago
SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles
Background: Post-translational modifications have a substantial influence on the structure and functions of protein. Post-translational phosphorylation is one of the most common m...
Paul D. Yoo, Yung Shwen Ho, Bing Bing Zhou, Albert...
BMCBI
2010
118views more  BMCBI 2010»
13 years 8 months ago
Artificial neural networks for the prediction of peptide drift time in ion mobility mass spectrometry
Background: There is an increasing usage of ion mobility-mass spectrometry (IMMS) in proteomics. IMMS combines the features of ion mobility spectrometry (IMS) and mass spectrometr...
Bing Wang, Steve Valentine, Manolo Plasencia, Srir...
BMCBI
2010
109views more  BMCBI 2010»
13 years 8 months ago
Pripper: prediction of caspase cleavage sites from whole proteomes
Background: Caspases are a family of proteases that have central functions in programmed cell death (apoptosis) and inflammation. Caspases mediate their effects through aspartate-...
Mirva Piippo, Niina Lietzén, Olli Nevalaine...
BMCBI
2007
181views more  BMCBI 2007»
13 years 8 months ago
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
Background: Macromolecular visualization as well as automated structural and functional annotation tools play an increasingly important role in the post-genomic era, contributing ...
Aleksey A. Porollo, Jaroslaw Meller