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BMCBI
2008
108views more  BMCBI 2008»
13 years 7 months ago
A nonparametric model for quality control of database search results in shotgun proteomics
Background: Analysis of complex samples with tandem mass spectrometry (MS/MS) has become routine in proteomic research. However, validation of database search results creates a bo...
Jiyang Zhang, Jianqi Li, Xin Liu, Hongwei Xie, Yun...
BMCBI
2007
145views more  BMCBI 2007»
13 years 7 months ago
The utility of MAS5 expression summary and detection call algorithms
Background: Used alone, the MAS5.0 algorithm for generating expression summaries has been criticized for high False Positive rates resulting from exaggerated variance at low inten...
Stuart D. Pepper, Emma K. Saunders, Laura E. Edwar...
ANCS
2005
ACM
14 years 28 days ago
Segmented hash: an efficient hash table implementation for high performance networking subsystems
Hash tables provide efficient table implementations, achieving O(1), query, insert and delete operations at low loads. However, at moderate or high loads collisions are quite freq...
Sailesh Kumar, Patrick Crowley
ASPLOS
2010
ACM
13 years 10 months ago
Butterfly analysis: adapting dataflow analysis to dynamic parallel monitoring
Online program monitoring is an effective technique for detecting bugs and security attacks in running applications. Extending these tools to monitor parallel programs is challeng...
Michelle L. Goodstein, Evangelos Vlachos, Shimin C...
BIOINFORMATICS
2010
108views more  BIOINFORMATICS 2010»
13 years 5 months ago
Mass spectrometry data processing using zero-crossing lines in multi-scale of Gaussian derivative wavelet
Motivation: Peaks are the key information in Mass Spectrometry (MS) which has been increasingly used to discover diseases related proteomic patterns. Peak detection is an essentia...
Nha Nguyen, Heng Huang, Soontorn Oraintara, An P. ...