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» A new approach to nonrepetitive sequences
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BMCBI
2006
145views more  BMCBI 2006»
13 years 10 months ago
Querying the public databases for sequences using complex keywords contained in the feature lines
Background: High throughput technologies often require the retrieval of large data sets of sequences. Retrieval of EMBL or GenBank entries using keywords is easy using tools such ...
Olivier Croce, Michaël Lamarre, Richard Chris...
BMCBI
2002
108views more  BMCBI 2002»
13 years 10 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
CVPR
2003
IEEE
15 years 9 days ago
Kernel Principal Angles for Classification Machines with Applications to Image Sequence Interpretation
We consider the problem of learning with instances defined over a space of sets of vectors. We derive a new positive definite kernel f(A B) defined over pairs of matrices A B base...
Lior Wolf, Amnon Shashua
ECCB
2008
IEEE
14 years 4 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
VLDB
2005
ACM
162views Database» more  VLDB 2005»
14 years 3 months ago
FiST: Scalable XML Document Filtering by Sequencing Twig Patterns
In recent years, publish-subscribe (pub-sub) systems based on XML document filtering have received much attention. In a typical pubsub system, subscribed users specify their inte...
Joonho Kwon, Praveen Rao, Bongki Moon, Sukho Lee