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IPPS
2006
IEEE
14 years 1 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
CSB
2005
IEEE
141views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Reconstructing Phylogenetic Networks Using Maximum Parsimony
Phylogenies—the evolutionary histories of groups of organisms—are one of the most widely used tools throughout the life sciences, as well as objects of research within systema...
Luay Nakhleh, Guohua Jin, Fengmei Zhao, John M. Me...
FPGA
2004
ACM
147views FPGA» more  FPGA 2004»
14 years 1 months ago
The SFRA: a corner-turn FPGA architecture
FPGAs normally operate at whatever clock rate is appropriate for the loaded configuration. When FPGAs are used as computational devices in a larger system, however, it is better ...
Nicholas Weaver, John R. Hauser, John Wawrzynek
DATE
2002
IEEE
206views Hardware» more  DATE 2002»
14 years 18 days ago
Accurate Area and Delay Estimators for FPGAs
We present an area and delay estimator in the context of a compiler that takes in high level signal and image processing applications described in MATLAB and performs automatic de...
Anshuman Nayak, Malay Haldar, Alok N. Choudhary, P...
ISCAS
1999
IEEE
126views Hardware» more  ISCAS 1999»
13 years 12 months ago
Applications of clone circuits to issues in physical-design
In a companion paper of this session [1] we formally defined the notion of equivalence classes of circuits which are physical clones of an existing benchmark seed circuit created ...
Michael D. Hutton, Jonathan Rose