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BMCBI
2011
13 years 11 days ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
ICS
2007
Tsinghua U.
14 years 2 months ago
Scheduling FFT computation on SMP and multicore systems
Increased complexity of memory systems to ameliorate the gap between the speed of processors and memory has made it increasingly harder for compilers to optimize an arbitrary code...
Ayaz Ali, S. Lennart Johnsson, Jaspal Subhlok
MICRO
2005
IEEE
126views Hardware» more  MICRO 2005»
14 years 2 months ago
Cost Sensitive Modulo Scheduling in a Loop Accelerator Synthesis System
Scheduling algorithms used in compilers traditionally focus on goals such as reducing schedule length and register pressure or producing compact code. In the context of a hardware...
Kevin Fan, Manjunath Kudlur, Hyunchul Park, Scott ...
VLDB
2007
ACM
115views Database» more  VLDB 2007»
14 years 9 months ago
Context-Aware Wrapping: Synchronized Data Extraction
The deep Web presents a pressing need for integrating large numbers of dynamically evolving data sources. To be more automatic yet accurate in building an integration system, we o...
Shui-Lung Chuang, Kevin Chen-Chuan Chang, ChengXia...
ESORICS
2004
Springer
14 years 2 months ago
Comparison Between Two Practical Mix Designs
We evaluate the anonymity provided by two popular email mix implementations, Mixmaster and Reliable, and compare their effectiveness through the use of simulations which model th...
Claudia Díaz, Len Sassaman, Evelyne Dewitte