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RECONFIG
2009
IEEE
182views VLSI» more  RECONFIG 2009»
14 years 2 months ago
Scalability Studies of the BLASTn Scan and Ungapped Extension Functions
BLASTn is a ubiquitous tool used for large scale DNA analysis. Detailed profiling tests reveal that the most computationally intensive sections of the BLASTn algorithm are the sc...
Siddhartha Datta, Ron Sass
RECOMB
2006
Springer
14 years 7 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
GPCE
2008
Springer
13 years 8 months ago
Property models: from incidental algorithms to reusable components
A user interface, such as a dialog, assists a user in synthesising a set of values, typically parameters for a command object. Code for “command parameter synthesis” is usuall...
Jaakko Järvi, Mat Marcus, Sean Parent, John F...
CVPR
2010
IEEE
13 years 10 months ago
A Study on Continuous Max-Flow and Min-Cut Approaches
Abstract. This work addresses a class of total-variation based multilabeling problems over a spatially continuous image domain, where the data fidelity term can be any bounded fun...
Jing Yuan, Egil Bae, Xuecheng Tai
ICCV
2011
IEEE
12 years 7 months ago
Perturb-and-MAP Random Fields: Using Discrete Optimization\\to Learn and Sample from Energy Models
We propose a novel way to induce a random field from an energy function on discrete labels. It amounts to locally injecting noise to the energy potentials, followed by finding t...
George Papandreou, Alan L. Yuille