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» Algorithms for Challenging Motif Problems
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BMCBI
2006
99views more  BMCBI 2006»
13 years 8 months ago
MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools
Background: Processing raw DNA sequence data is an especially challenging task for relatively small laboratories and core facilities that produce as many as 5000 or more DNA seque...
Chun Liang, Feng Sun, Haiming Wang, Junfeng Qu, Ro...
BMCBI
2007
154views more  BMCBI 2007»
13 years 8 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
BMCBI
2005
151views more  BMCBI 2005»
13 years 8 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...
PVLDB
2008
107views more  PVLDB 2008»
13 years 7 months ago
Finding relevant patterns in bursty sequences
Sequence data is ubiquitous and finding frequent sequences in a large database is one of the most common problems when analyzing sequence data. Unfortunately many sources of seque...
Alexander Lachmann, Mirek Riedewald
INFOCOM
2010
IEEE
13 years 6 months ago
Leaping Multiple Headers in a Single Bound: Wire-Speed Parsing Using the Kangaroo System
—More fundamental than IP lookups and packet classification in routers is the extraction of fields such as IP Dest and TCP Ports that determine packet forwarding. While parsing...
Christos Kozanitis, John Huber, Sushil Singh, Geor...