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» Algorithms for Challenging Motif Problems
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BMCBI
2007
144views more  BMCBI 2007»
13 years 8 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
SIAMSC
2008
149views more  SIAMSC 2008»
13 years 8 months ago
Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
In systems biology, the stochastic description of biochemical reaction kinetics is increasingly being employed to model gene regulatory networks and signalling pathways. Mathematic...
Peter Deuflhard, Wilhelm Huisinga, T. Jahnke, Mich...
IPM
2007
156views more  IPM 2007»
13 years 8 months ago
p2pDating: Real life inspired semantic overlay networks for Web search
We consider a network of autonomous peers forming a logically global but physically distributed search engine, where every peer has its own local collection generated by independe...
Josiane Xavier Parreira, Sebastian Michel, Gerhard...
RSA
2000
170views more  RSA 2000»
13 years 7 months ago
Delayed path coupling and generating random permutations
We analyze various stochastic processes for generating permutations almost uniformly at random in distributed and parallel systems. All our protocols are simple, elegant and are b...
Artur Czumaj, Miroslaw Kutylowski
PVLDB
2008
82views more  PVLDB 2008»
13 years 7 months ago
Mining non-redundant high order correlations in binary data
Many approaches have been proposed to find correlations in binary data. Usually, these methods focus on pair-wise correlations. In biology applications, it is important to find co...
Xiang Zhang, Feng Pan, Wei Wang 0010, Andrew B. No...