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» Algorithms for Challenging Motif Problems
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SOFTVIS
2010
ACM
13 years 8 months ago
Heapviz: interactive heap visualization for program understanding and debugging
Understanding the data structures in a program is crucial to understanding how the program works, or why it doesn't work. Inspecting the code that implements the data structu...
Edward Aftandilian, Sean Kelley, Connor Gramazio, ...
CDC
2008
IEEE
217views Control Systems» more  CDC 2008»
13 years 8 months ago
An ensemble Kalman filtering approach to highway traffic estimation using GPS enabled mobile devices
Traffic state estimation is a challenging problem for the transportation community due to the limited deployment of sensing infrastructure. However, recent trends in the mobile pho...
Daniel B. Work, Olli-Pekka Tossavainen, Sebastien ...
BMCBI
2010
113views more  BMCBI 2010»
13 years 8 months ago
Unifying generative and discriminative learning principles
Background: The recognition of functional binding sites in genomic DNA remains one of the fundamental challenges of genome research. During the last decades, a plethora of differe...
Jens Keilwagen, Jan Grau, Stefan Posch, Marc Stric...
BMCBI
2008
175views more  BMCBI 2008»
13 years 8 months ago
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Background: Protein-protein interactions are ubiquitous and essential for all cellular processes. High-resolution X-ray crystallographic structures of protein complexes can reveal...
Andrew J. Bordner, Andrey A. Gorin
BMCBI
2007
151views more  BMCBI 2007»
13 years 8 months ago
Minimus: a fast, lightweight genome assembler
Background: Genome assemblers have grown very large and complex in response to the need for algorithms to handle the challenges of large whole-genome sequencing projects. Many of ...
Daniel D. Sommer, Arthur L. Delcher, Steven L. Sal...