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BMCBI
2006
130views more  BMCBI 2006»
13 years 9 months ago
Docking protein domains in contact space
Background: Many biological processes involve the physical interaction between protein domains. Understanding these functional associations requires knowledge of the molecular str...
Stefano Lise, Alice Walker-Taylor, David T. Jones
BMCBI
2006
153views more  BMCBI 2006»
13 years 9 months ago
Automatic document classification of biological literature
Background: Document classification is a wide-spread problem with many applications, from organizing search engine snippets to spam filtering. We previously described Textpresso, ...
David Chen, Hans-Michael Müller, Paul W. Ster...
BMCBI
2007
126views more  BMCBI 2007»
13 years 9 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
BMCBI
2007
144views more  BMCBI 2007»
13 years 9 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
COR
2007
163views more  COR 2007»
13 years 9 months ago
A general heuristic for vehicle routing problems
We present a unified heuristic, which is able to solve five different variants of the vehicle routing problem: the vehicle routing problem with time windows (VRPTW), the capacit...
David Pisinger, Stefan Ropke
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