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» Algorithms for phylogenetic footprinting
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RECOMB
2006
Springer
14 years 10 months ago
Maximal Accurate Forests from Distance Matrices
Abstract. We present a fast converging method for distance-based phylogenetic inference, which is novel in two respects. First, it is the only method (to our knowledge) to guarante...
Constantinos Daskalakis, Cameron Hill, Alexander J...
ISMB
2007
14 years 3 days ago
Polyploids, genome halving and phylogeny
Autopolyploidization and allopolyploidization events multiply the number of chromosomes and genomic content. Genome rearrangement phylogenetics requires that all genomes analyzed ...
David Sankoff, Chunfang Zheng, Qian Zhu
BMCBI
2008
140views more  BMCBI 2008»
13 years 10 months ago
FUNYBASE: a FUNgal phYlogenomic dataBASE
Background: The increasing availability of fungal genome sequences provides large numbers of proteins for evolutionary and phylogenetic analyses. However the heterogeneity of data...
Sylvain Marthey, Gabriela Aguileta, Françoi...
BMCBI
2006
137views more  BMCBI 2006»
13 years 9 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
CASES
2009
ACM
13 years 7 months ago
Mapping stream programs onto heterogeneous multiprocessor systems
This paper presents a partitioning and allocation algorithm for an iterative stream compiler, targeting heterogeneous multiprocessors with constrained distributed memory and any c...
Paul M. Carpenter, Alex Ramírez, Eduard Ayg...