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» Algorithms for the Topological Watershed
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RECOMB
2007
Springer
16 years 6 months ago
Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
Rohit Singh, Jinbo Xu, Bonnie Berger
STOC
2002
ACM
111views Algorithms» more  STOC 2002»
16 years 6 months ago
The price of anarchy is independent of the network topology
We study the degradation in network performance caused by the selfish behavior of noncooperative network users. We consider a model of selfish routing in which the latency experie...
Tim Roughgarden
ICCCN
2008
IEEE
16 years 16 days ago
Logical Topology Design for IP-over-WDM Networks: A Hybrid Approach for Minimum Protection Capacity
—The problem of designing high capacity and high bit rate IP-over-WDM networks, which can provide uninterrupted service in the presence of network equipment failures, continues t...
Muhammad S. Javed, Krishnaiyan Thulasiraman, Guoli...
161
Voted
BMCBI
2004
104views more  BMCBI 2004»
15 years 6 months ago
Discriminative topological features reveal biological network mechanisms
Background: Recent genomic and bioinformatic advances have motivated the development of numerous network models intending to describe graphs of biological, technological, and soci...
Manuel Middendorf, Etay Ziv, Carter Adams, Jen Hom...
VVS
1998
IEEE
133views Visualization» more  VVS 1998»
15 years 10 months ago
An Accurate Method for Voxelizing Polygon Meshes
The process of generating discrete surfaces in a volumetric representation, termed voxelization, is confronted with topological considerations as well as accuracy and efficiency r...
Jian Huang, Roni Yagel, Vassily Filippov, Yair Kur...