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IJBRA
2010
116views more  IJBRA 2010»
13 years 9 months ago
Scaling alignment of large ontologies
: In recent years, the number of ontologies shared on the Web has increased dramatically, supporting a growing set of applications such as biological knowledge sharing, enhanced se...
Suzette Stoutenburg, Jugal Kalita, Kaily Ewing, Li...
GECCO
2004
Springer
137views Optimization» more  GECCO 2004»
14 years 3 months ago
Evolving Better Multiple Sequence Alignments
Aligning multiple DNA or protein sequences is a fundamental step in the analyses of phylogeny, homology and molecular structure. Heuristic algorithms are applied because optimal mu...
Luke Sheneman, James A. Foster
BMCBI
2007
152views more  BMCBI 2007»
13 years 10 months ago
A cross-species alignment tool (CAT)
Background: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for int...
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Z...
BMCBI
2008
106views more  BMCBI 2008»
13 years 10 months ago
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities
Background: Identification of RNA homologs within genomic stretches is difficult when pairwise sequence identity is low or unalignable flanking residues are present. In both cases...
Usman Roshan, Satish Chikkagoudar, Dennis R. Lives...
DAS
2006
Springer
14 years 2 months ago
Aligning Transcripts to Automatically Segmented Handwritten Manuscripts
Abstract. Training and evaluation of techniques for handwriting recognition and retrieval is a challenge given that it is difficult to create large ground-truthed datasets. This is...
Jamie L. Rothfeder, R. Manmatha, Toni M. Rath