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» Aligning Alignments
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BMCBI
2007
153views more  BMCBI 2007»
13 years 7 months ago
Lower bounds on multiple sequence alignment using exact 3-way alignment
Background: Multiple sequence alignment is fundamental. Exponential growth in computation time appears to be inevitable when an optimal alignment is required for many sequences. E...
Charles J. Colbourn, Sudhir Kumar
ACL
2004
13 years 9 months ago
Aligning words using matrix factorisation
Aligning words from sentences which are mutual translations is an important problem in different settings, such as bilingual terminology extraction, Machine Translation, or projec...
Cyril Goutte, Kenji Yamada, Éric Gaussier
ISMB
2007
13 years 9 months ago
Multiple alignment by aligning alignments
Travis J. Wheeler, John D. Kececioglu
BMCBI
2010
104views more  BMCBI 2010»
13 years 7 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
BMCBI
2005
142views more  BMCBI 2005»
13 years 7 months ago
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
Olaf R. P. Bininda-Emonds