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» Aligning alignments exactly
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146
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BIOINFORMATICS
2011
14 years 7 months ago
RINQ: Reference-based Indexing for Network Queries
We consider the problem of similarity queries in biological network databases. Given a database of networks, similarity query returns all the database networks whose similarity (i...
Günhan Gülsoy, Tamer Kahveci
BMCBI
2011
14 years 7 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
149
Voted
CVPR
2012
IEEE
13 years 5 months ago
Multi-video browsing and summarization
We propose a method for browsing multiple videos with a common theme, such as the result of a search query on a video sharing website, or videos of an event covered by multiple ca...
Kevin Dale, Eli Shechtman, Shai Avidan, Hanspeter ...
149
Voted
RECOMB
2006
Springer
16 years 3 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
127
Voted
ICANNGA
2007
Springer
112views Algorithms» more  ICANNGA 2007»
15 years 9 months ago
Multiple Sequence Alignment with Evolutionary-Progressive Method
A new evolutionary-progressive method for Multiple Sequence Alignment problem is proposed. The method efficiently combines flexibility of evolutionary approach with speed and accu...
Pawel Kupis, Jacek Mandziuk