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NAR
2006
128views more  NAR 2006»
13 years 9 months ago
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
Expresso is a multiple sequence alignment server that aligns sequences using structural information. The user only needs to provide sequences. The server runs BLAST to identify cl...
Fabrice Armougom, Sébastien Moretti, Olivie...
MT
1998
69views more  MT 1998»
13 years 9 months ago
Bilingual Sentence Alignment: Balancing Robustness and Accuracy
Sentence alignment is the problem of making explicit the relations that exist between the sentences of two texts that are known to be mutual translations. Automatic sentence align...
Michel Simard, Pierre Plamondon
NAR
2010
140views more  NAR 2010»
13 years 4 months ago
GUIDANCE: a web server for assessing alignment confidence scores
Evaluating the accuracy of multiple sequence alignment (MSA) is critical for virtually every comparative sequence analysis that uses an MSA as input. Here we present the GUIDANCE ...
Osnat Penn, Eyal Privman, Haim Ashkenazy, Giddy La...
RECOMB
2012
Springer
12 years 7 days ago
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising
We develop a novel and general approach to estimating the accuracy of protein multiple sequence alignments without knowledge of a reference alignment, and use our approach to addre...
Dan F. DeBlasio, Travis J. Wheeler, John D. Kececi...
CSB
2005
IEEE
167views Bioinformatics» more  CSB 2005»
14 years 3 months ago
SinicView: An Interactive Visualization Tool for Comparison of Multiple Sequence Alignment Results
In the initial stage of sequence analysis, a biologist is first faced with the questions about how to choose the best tool to align sequences of interest and how to analyze and v...
Arthur Chun-Chieh Shih, D. T. Lee, Laurent Lin, Ch...