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    ISMB
    1996
    155views Computational Biology» more  ISMB 1996»
    Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model
    13 years 9 months ago
    Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model
    Download  www.aaai.org
    We have developed a hidden Markov model (HMM)to detect the protein coding regions within one megabase contiguous sequence data, registered in a database called GenBankin eight ent...
    Tetsushi Yada, Makoto Hirosawa
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    ISMB
    1993
    91views Computational Biology» more  ISMB 1993»
    Detection of Correlations in tRNA Sequences with Structural Implications
    13 years 9 months ago
    Detection of Correlations in tRNA Sequences with Structural Implications
    Download  cmgm.stanford.edu
    Using a flexible representation of biological sequences, we have performed a comparative analysis of 1208 known tRNA sequences. We believe we our technique is a more sensitive met...
    Tod M. Klingler, Douglas L. Brutlag
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    BMCBI
    2011
    242views Artificial Intelligence» more  BMCBI 2011»
    Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
    13 years 2 months ago
    Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
    Download  www.biomedcentral.com
    Background: In the last decades, microarray technology has spread, leading to a dramatic increase of publicly available datasets. The first statistical tools developed were focuse...
    Paolo G. V. Martini, Davide Risso, Gabriele Sales,...
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    BMCBI
    2008
    149views more  BMCBI 2008»
    Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
    13 years 7 months ago
    Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
    Download  www.biomedcentral.com
    Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
    Olivier Bastien, Eric Maréchal
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    BMCBI
    2002
    128views more  BMCBI 2002»
    Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in euka
    13 years 7 months ago
    Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in euka
    Download  www.biomedcentral.com
    Background: Gene regulation in eukaryotes is mainly effected through transcription factors binding to rather short recognition motifs generally located upstream of the coding regi...
    Michele Caselle, Ferdinando Di Cunto, Paolo Prover...
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