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» Alignment of Non-Overlapping Sequences
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BIOINFORMATICS
2007
74views more  BIOINFORMATICS 2007»
13 years 10 months ago
Simultaneous alignment and annotation of cis-regulatory regions
Genomic transcriptional processes rely heavily on the combinatorial binding of transcription factors on the upstream regions of genes. Analysis and complete characterization of su...
Abha Singh Bais, Steffen Grossmann, Martin Vingron
ICSM
2007
IEEE
14 years 4 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
AIRS
2004
Springer
14 years 3 months ago
Improving Transliteration with Precise Alignment of Phoneme Chunks and Using Contextual Features
Abstract. Automatic transliteration of foreign names is basically regarded as a diminutive clone of the machine translation (MT) problem. It thus follows IBM’s conventional MT mo...
Wei Gao, Kam-Fai Wong, Wai Lam
COLING
2008
13 years 11 months ago
Extracting Synchronous Grammar Rules From Word-Level Alignments in Linear Time
We generalize Uno and Yagiura's algorithm for finding all common intervals of two permutations to the setting of two sequences with many-to-many alignment links across the tw...
Hao Zhang, Daniel Gildea, David Chiang
ICML
2004
IEEE
14 years 11 months ago
A graphical model for protein secondary structure prediction
In this paper, we present a graphical model for protein secondary structure prediction. This model extends segmental semi-Markov models (SSMM) to exploit multiple sequence alignme...
Wei Chu, Zoubin Ghahramani, David L. Wild