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» Alignment of Non-Overlapping Sequences
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BMCBI
2008
107views more  BMCBI 2008»
13 years 10 months ago
RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
Background: Repeat-induced point mutation (RIP) is a fungal-specific genome defence mechanism that alters the sequences of repetitive DNA, thereby inactivating coding genes. Repea...
James K. Hane, Richard P. Oliver
RECOMB
2002
Springer
14 years 10 months ago
Revealing protein structures: a new method for mapping antibody epitopes
A recent idea for determining the three-dimensional structure of a protein uses antibody recognition of surface structure and random peptide libraries to map antibody epitope comb...
Brendan Mumey, Brian W. Bailey, Edward A. Dratz
BMCBI
2007
105views more  BMCBI 2007»
13 years 10 months ago
Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences
Background: The secondary structure of an RNA must be known before the relationship between its structure and function can be determined. One way to predict the secondary structur...
Stefan Engelen, Fariza Tahi
RECOMB
2006
Springer
14 years 10 months ago
Structural Alignment of Pseudoknotted RNA
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
IBPRIA
2003
Springer
14 years 3 months ago
Combining Phrase-Based and Template-Based Alignment Models in Statistical Translation
In statistical machine translation, single-word based models have an important deficiency; they do not take contextual information into account for the translation decision. A poss...
Jesús Tomás, Francisco Casacuberta