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» Alignment of Non-Overlapping Sequences
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RECOMB
2005
Springer
14 years 10 months ago
Using Multiple Alignments to Improve Gene Prediction
The multiple species de novo gene prediction problem can be stated as follows: given an alignment of genomic sequences from two or more organisms, predict the location and structur...
Samuel S. Gross, Michael R. Brent
GCB
2000
Springer
137views Biometrics» more  GCB 2000»
14 years 1 months ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright
BMCBI
2007
128views more  BMCBI 2007»
13 years 10 months ago
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assess
Background: Similarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. Howeve...
Paolo Ferragina, Raffaele Giancarlo, Valentina Gre...
NAR
2011
157views Computer Vision» more  NAR 2011»
13 years 1 months ago
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
We updated the plant transcription factor (TF) database to version 2.0 (PlantTFDB 2.0, http:// planttfdb.cbi.pku.edu.cn) which contains 53 319 putative TFs predicted from 49 speci...
He Zhang, Jinpu Jin, Liang Tang, Yi Zhao, Xiaochen...
ICCV
2011
IEEE
12 years 10 months ago
Robust Object Pose Estimation via Statistical Manifold Modeling
We propose a novel statistical manifold modeling approach that is capable of classifying poses of object categories from video sequences by simultaneously minimizing the intra-cla...
Liang Mei, Jingen Liu, Alfred Hero, Silvio Savares...