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» Alignment of Polarized Sets
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RECOMB
2009
Springer
16 years 4 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...
WABI
2004
Springer
106views Bioinformatics» more  WABI 2004»
15 years 9 months ago
Suboptimal Local Alignments Across Multiple Scoring Schemes
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
Morris Michael, Christoph Dieterich, Jens Stoye
BMCBI
2005
122views more  BMCBI 2005»
15 years 3 months ago
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequenc
Background: Currently available methods to predict splice sites are mainly based on the independent and progressive alignment of transcript data (mostly ESTs) to the genomic seque...
Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
129
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APGV
2010
ACM
171views Visualization» more  APGV 2010»
14 years 11 months ago
Perceptual principles for scalable sequence alignment visualization
Sequence alignment visualization is an important tool for understanding genomics data. Current approaches have difficulty scaling to the larger data sets becoming available. In th...
Danielle Albers, Michael Gleicher
OTM
2009
Springer
15 years 10 months ago
Merging Sets of Taxonomically Organized Data Using Concept Mappings under Uncertainty
Abstract. We present a method for using aligned ontologies to merge taxonomically organized data sets that have apparently compatible schemas, but potentially different semantics f...
David Thau, Shawn Bowers, Bertram Ludäscher