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» Alignments of RNA Structures
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SODA
2007
ACM
76views Algorithms» more  SODA 2007»
13 years 9 months ago
An unbiased pointing operator for unlabeled structures, with applications to counting and sampling
We introduce a general method to count and randomly sample unlabeled combinatorial structures. The approach is based on pointing unlabeled structures in an “unbiased” way, i.e...
Manuel Bodirsky, Éric Fusy, Mihyun Kang, St...
SCFBM
2008
131views more  SCFBM 2008»
13 years 7 months ago
FASH: A web application for nucleotides sequence search
: FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a ...
Isana Veksler-Lublinsky, Danny Barash, Chai Avisar...
LSSC
2007
Springer
14 years 2 months ago
An Ant-Based Model for Multiple Sequence Alignment
Abstract. Multiple sequence alignment is a key process in today’s biology, and finding a relevant alignment of several sequences is much more challenging than just optimizing so...
Frédéric Guinand, Yoann Pigné
SEMWEB
2007
Springer
14 years 2 months ago
Towards Correspondence Patterns for Ontology Mediation
We introduce in this paper correspondence patterns as a tool to design ontology alignments. Based on existing research on patterns in the fields of software and ontology engineeri...
François Scharffe, Ying Ding, Dieter Fensel
CP
2003
Springer
14 years 1 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...