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RECOMB
2010
Springer
13 years 9 months ago
naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing
Immense amounts of raw instrument data (i.e., images of fluorescence) are currently being generated using ultra high-throughput sequencing platforms. An important computational cha...
Wei-Chun Kao, Yun S. Song
FORMATS
2006
Springer
13 years 11 months ago
Model Checking Timed Automata with Priorities Using DBM Subtraction
In this paper we describe an extension of timed automata with priorities, and efficient algorithms to compute subtraction on DBMs (difference bounded matrices), needed in symbolic ...
Alexandre David, John Håkansson, Kim Guldstr...
BMCBI
2007
107views more  BMCBI 2007»
13 years 7 months ago
A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL
Background: Identity by descent (IBD) matrix estimation is a central component in mapping of Quantitative Trait Loci (QTL) using variance component models. A large number of algor...
Francois Besnier, Örjan Carlborg
BMCBI
2005
152views more  BMCBI 2005»
13 years 7 months ago
An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem
Background: The protein folding problem is a fundamental problems in computational molecular biology and biochemical physics. Various optimisation methods have been applied to for...
Alena Shmygelska, Holger H. Hoos
AUSDM
2007
Springer
173views Data Mining» more  AUSDM 2007»
14 years 1 months ago
The Use of Various Data Mining and Feature Selection Methods in the Analysis of a Population Survey Dataset
This paper reports the results of feature reduction in the analysis of a population based dataset for which there were no specific target variables. All attributes were assessed a...
Ellen Pitt, Richi Nayak