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BMCBI
2008
163views more  BMCBI 2008»
13 years 9 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
JIB
2006
220views more  JIB 2006»
13 years 8 months ago
An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions
Protein-protein interactions (PPI) play a key role in many biological systems. Over the past few years, an explosion in availability of functional biological data obtained from hi...
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco...
BMCBI
2002
131views more  BMCBI 2002»
13 years 8 months ago
Efficient Boolean implementation of universal sequence maps (bUSM)
Background: Recently, Almeida and Vinga offered a new approach for the representation of arbitrary discrete sequences, referred to as Universal Sequence Maps (USM), and discussed ...
John Schwacke, Jonas S. Almeida
CVPR
2008
IEEE
14 years 10 months ago
Robust tensor factorization using R1 norm
Over the years, many tensor based algorithms, e.g. two dimensional principle component analysis (2DPCA), two dimensional singular value decomposition (2DSVD), high order SVD, have...
Heng Huang, Chris H. Q. Ding
BMCBI
2007
141views more  BMCBI 2007»
13 years 9 months ago
HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
Background: Correct temporal and spatial gene expression during metazoan development relies on combinatorial interactions between different transcription factors. As a consequence...
Erik Larsson, Per Lindahl, Petter Mostad