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BMCBI
2010
153views more  BMCBI 2010»
13 years 8 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
ASPLOS
2006
ACM
14 years 3 months ago
Software-based instruction caching for embedded processors
While hardware instruction caches are present in virtually all general-purpose and high-performance microprocessors today, many embedded processors use SRAM or scratchpad memories...
Jason E. Miller, Anant Agarwal
IPPS
2009
IEEE
14 years 3 months ago
Managing the construction and use of Functional Performance Models in a Grid environment
— This paper presents a tool, the Performance Model Manager, which addresses the complexity of the construction and management of a set of Functional Performance Models on a comp...
Robert Higgins, Alexey L. Lastovetsky
WWW
2007
ACM
14 years 9 months ago
Consistency-preserving caching of dynamic database content
With the growing use of dynamic web content generated from relational databases, traditional caching solutions for throughput and latency improvements are ineffective. We describe...
Niraj Tolia, M. Satyanarayanan
IPPS
2005
IEEE
14 years 2 months ago
Stream PRAM
Parallel random access memory, or PRAM, is a now venerable model of parallel computation that that still retains its usefulness for the design and analysis of parallel algorithms....
Darrell R. Ulm, Michael Scherger