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» An assessment of the role of computing in systems biology
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JMLR
2008
127views more  JMLR 2008»
13 years 8 months ago
Incremental Identification of Qualitative Models of Biological Systems using Inductive Logic Programming
The use of computational models is increasingly expected to play an important role in predicting the behaviour of biological systems. Models are being sought at different scales o...
Ashwin Srinivasan, Ross D. King
AB
2007
Springer
14 years 2 months ago
Algebraic Systems Biology: Theses and Hypotheses
What is systems biology? What can biologists gain from an attempt to algebraize the questions in systems biology? Starting with plausible biological theses, can one algebraically m...
Bud Mishra
SIGCSE
2004
ACM
112views Education» more  SIGCSE 2004»
14 years 1 months ago
Design patterns for marine biology simulation
We specify and implement a GUI application that simulates marine biological systems by making extensive use of objectoriented design patterns. The key design patterns are model-vi...
Dung Zung Nguyen, Mathias Ricken, Stephen B. Wong
TCS
2011
13 years 3 months ago
Parameter estimation for Boolean models of biological networks
Boolean networks have long been used as models of molecular networks and play an increasingly important role in systems biology. This paper describes a software package, offered ...
Elena S. Dimitrova, Luis David García-Puent...
BIB
2007
139views more  BIB 2007»
13 years 8 months ago
Petri net modelling of biological networks
Mathematical modelling is increasingly used to get insights into the functioning of complex biological networks. In this context, Petri nets (PNs) have recently emerged as a promi...
Claudine Chaouiya