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    BMCBI
    2008
    110views more  BMCBI 2008»
    Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated da
    13 years 7 months ago
    Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated da
    Download  www.biomedcentral.com
    Background: We have previously described an approach to predicting the substrate specificity of serine-threonine protein kinases. The method, named Predikin, identifies key conser...
    Neil F. W. Saunders, Ross I. Brinkworth, Thomas Hu...
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    JCC
    2008
    132views more  JCC 2008»
    The implementation of a fast and accurate QM/MM potential method in Amber
    13 years 7 months ago
    The implementation of a fast and accurate QM/MM potential method in Amber
    Download  www.rosswalker.co.uk
    Abstract: Version 9 of the Amber simulation programs includes a new semi-empirical hybrid QM/MM functionality. This includes support for implicit solvent (generalized Born) and for...
    Ross C. Walker, Michael F. Crowley, David A. Case
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    BMCBI
    2007
    128views more  BMCBI 2007»
    A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
    13 years 7 months ago
    A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
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    Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...
    Lei Xie, Philip E. Bourne
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    BMCBI
    2006
    103views more  BMCBI 2006»
    Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequili
    13 years 7 months ago
    Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequili
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    Background: The discovery of cis-regulatory motifs still remains a challenging task even though the number of sequenced genomes is constantly growing. Computational analyses using...
    Kenneth W. Berendzen, Kurt Stüber, Klaus Hart...
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    BIOINFORMATICS
    2011
    228views Artificial Intelligence» more  BIOINFORMATICS 2011»
    Integrative network alignment reveals large regions of global network similarity in yeast and human
    13 years 2 months ago
    Integrative network alignment reveals large regions of global network similarity in yeast and human
    Download  www.doc.ic.ac.uk
    Motivation: High-throughput methods for detecting molecular interactions have produced large sets of biological network data with much more yet to come. Analogous to sequence alig...
    Oleksii Kuchaiev, Natasa Przulj
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