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» An ontology for bioinformatics applications
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WWW
2006
ACM
14 years 9 months ago
Compressing and searching XML data via two zips
XML is fast becoming the standard format to store, exchange and publish over the web, and is getting embedded in applications. Two challenges in handling XML are its size (the XML...
Paolo Ferragina, Fabrizio Luccio, Giovanni Manzini...
VLSID
2009
IEEE
177views VLSI» more  VLSID 2009»
14 years 9 months ago
Accelerating System-Level Design Tasks Using Commodity Graphics Hardware: A Case Study
Many system-level design tasks (e.g. timing analysis, hardware/software partitioning and design space exploration) involve computational kernels that are intractable (usually NP-ha...
Unmesh D. Bordoloi, Samarjit Chakraborty
KDD
2007
ACM
168views Data Mining» more  KDD 2007»
14 years 9 months ago
A probabilistic framework for relational clustering
Relational clustering has attracted more and more attention due to its phenomenal impact in various important applications which involve multi-type interrelated data objects, such...
Bo Long, Zhongfei (Mark) Zhang, Philip S. Yu
RECOMB
2004
Springer
14 years 9 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
SIGMOD
2005
ACM
166views Database» more  SIGMOD 2005»
14 years 9 months ago
Substructure Similarity Search in Graph Databases
Advanced database systems face a great challenge raised by the emergence of massive, complex structural data in bioinformatics, chem-informatics, and many other applications. The ...
Xifeng Yan, Philip S. Yu, Jiawei Han