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» Analysis of Procedure Splitability
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BMCBI
2010
102views more  BMCBI 2010»
13 years 9 months ago
Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
Background: Chromatin immunoprecipitation followed by microarray hybridization (ChIP-chip) is used to study protein-DNA interactions and histone modifications on a genome-scale. T...
Shouyong Peng, Mitzi I. Kuroda, Peter J. Park
BMCBI
2007
146views more  BMCBI 2007»
13 years 9 months ago
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
BMCBI
2005
126views more  BMCBI 2005»
13 years 9 months ago
An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments
Background: Although DNA microarray technologies are very powerful for the simultaneous quantitative characterization of thousands of genes, the quality of the obtained experiment...
Eugene Novikov, Emmanuel Barillot
ICRE
1998
IEEE
14 years 1 months ago
Surfacing Root Requirements Interactions from Inquiry Cycle Requirements Documents
Systems requirements errors are numerous, persistent, and expensive. To detect such errors, and focus on critical ones during the development of a requirements document, we have d...
William N. Robinson, Suzanne D. Pawlowski
CAV
2004
Springer
108views Hardware» more  CAV 2004»
14 years 1 months ago
Functional Dependency for Verification Reduction
Abstract. The existence of functional dependency among the state variables of a state transition system was identified as a common cause of inefficient BDD representation in formal...
Jie-Hong Roland Jiang, Robert K. Brayton