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    BMCBI
    2004
    180views more  BMCBI 2004»
    Noise filtering and nonparametric analysis of microarray data underscores discriminating markers of oral, prostate, lung, ovaria
    13 years 7 months ago
    Noise filtering and nonparametric analysis of microarray data underscores discriminating markers of oral, prostate, lung, ovaria
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    Background: A major goal of cancer research is to identify discrete biomarkers that specifically characterize a given malignancy. These markers are useful in diagnosis, may identi...
    Virginie M. Aris, Michael J. Cody, Jeff Cheng, Jam...
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    BMCBI
    2002
    89views more  BMCBI 2002»
    Sources of variability and effect of experimental approach on expression profiling data interpretation
    13 years 7 months ago
    Sources of variability and effect of experimental approach on expression profiling data interpretation
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    Background: We provide a systematic study of the sources of variability in expression profiling data using 56 RNAs isolated from human muscle biopsies (34 Affymetrix MuscleChip ar...
    Marina Bakay, Yi-Wen Chen, Rehannah H. A. Borup, P...
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    BMCBI
    2006
    103views more  BMCBI 2006»
    Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression
    13 years 7 months ago
    Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression
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    Background: The identification of differentially expressed genes (DEGs) from Affymetrix GeneChips arrays is currently done by first computing expression levels from the low-level ...
    Sébastien Lemieux
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    BMCBI
    2011
    215views Artificial Intelligence» more  BMCBI 2011»
    AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm
    13 years 2 months ago
    AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm
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    Background: Cross-platform analysis of gene express data requires multiple, intricate processes at different layers with various platforms. However, existing tools handle only a s...
    Jihoon Kim, Kiltesh Patel, Hyunchul Jung, Winston ...
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    BMCBI
    2007
    180views more  BMCBI 2007»
    Using expression arrays for copy number detection: an example from E. coli
    13 years 7 months ago
    Using expression arrays for copy number detection: an example from E. coli
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    Background: The sequencing of many genomes and tiling arrays consisting of millions of DNA segments spanning entire genomes have made high-resolution copy number analysis possible...
    Dmitriy Skvortsov, Diana Abdueva, Michael E. Stitz...
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