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    GCB
    2008
    Springer
    103views Biometrics» more  GCB 2008»
    Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data
    13 years 9 months ago
    Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data
    Download  dig.ipk-gatersleben.de
    : Array-based analysis of chromatin immunoprecipitation data (ChIP-chip) is a powerful technique for identifying DNA target regions of individual transcription factors. Here, we pr...
    Michael Seifert, Jens Keilwagen, Marc Strickert, I...
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    NAR
    2007
    155views more  NAR 2007»
    AthaMap web tools for the analysis and identification of co-regulated genes
    13 years 8 months ago
    AthaMap web tools for the analysis and identification of co-regulated genes
    Download  www.athamap.de
    The AthaMap database generates a map of cisregulatory elements for the whole Arabidopsis thaliana genome. This database has been extended by new tools to identify common cis-regul...
    Claudia Galuschka, Martin Schindler, Lorenz Bü...
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    BMCBI
    2007
    126views more  BMCBI 2007»
    Multiple non-collinear TF-map alignments of promoter regions
    13 years 8 months ago
    Multiple non-collinear TF-map alignments of promoter regions
    Download  www.biomedcentral.com
    Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
    Enrique Blanco, Roderic Guigó, Xavier Messe...
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    BMCBI
    2010
    96views more  BMCBI 2010»
    QTLminer: identifying genes regulating quantitative traits
    13 years 8 months ago
    QTLminer: identifying genes regulating quantitative traits
    Download  www.biomedcentral.com
    Background: Quantitative trait locus (QTL) mapping identifies genomic regions that likely contain genes regulating a quantitative trait. However, QTL regions may encompass tens to...
    Rudi Alberts, Klaus Schughart
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    BMCBI
    2005
    140views more  BMCBI 2005»
    Dissecting systems-wide data using mixture models: application to identify affected cellular processes
    13 years 8 months ago
    Dissecting systems-wide data using mixture models: application to identify affected cellular processes
    Download  www.biomedcentral.com
    Background: Functional analysis of data from genome-scale experiments, such as microarrays, requires an extensive selection of differentially expressed genes. Under many condition...
    J. Peter Svensson, Renée X. de Menezes, Ing...
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