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» Analyzing time series gene expression data
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BMCBI
2007
120views more  BMCBI 2007»
13 years 7 months ago
Recognition of interferon-inducible sites, promoters, and enhancers
Background: Computational analysis of gene regulatory regions is important for prediction of functions of many uncharacterized genes. With this in mind, search of the target genes...
Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Me...
BMCBI
2008
76views more  BMCBI 2008»
13 years 7 months ago
Empirical Bayes analysis of single nucleotide polymorphisms
Background: An important goal of whole-genome studies concerned with single nucleotide polymorphisms (SNPs) is the identification of SNPs associated with a covariate of interest s...
Holger Schwender, Katja Ickstadt
ACTA
2010
104views more  ACTA 2010»
13 years 7 months ago
Reachability results for timed automata with unbounded data structures
Systems of Data Management Timed Automata (SDMTAs) are networks of communicating timed automata with structures to store messages and functions to manipulate them. We prove the dec...
Ruggero Lanotte, Andrea Maggiolo-Schettini, Angelo...
BMCBI
2008
138views more  BMCBI 2008»
13 years 7 months ago
Comparative analyses of bidirectional promoters in vertebrates
Background: Orthologous genes with deep phylogenetic histories are likely to retain similar regulatory features. In this report we utilize orthology assignments for pairs of genes...
Mary Qu Yang, James Taylor, Laura Elnitski
BMCBI
2004
165views more  BMCBI 2004»
13 years 7 months ago
Analysis of oligonucleotide array experiments with repeated measures using mixed models
Background: Two or more factor mixed factorial experiments are becoming increasingly common in microarray data analysis. In this case study, the two factors are presence (Patients...
Hao Li, Constance L. Wood, Thomas V. Getchell, Mar...