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BMCBI
2008
121views more  BMCBI 2008»
13 years 10 months ago
BioSAVE: Display of scored annotation within a sequence context
Background: Visualization of sequence annotation is a common feature in many bioinformatics tools. For many applications it is desirable to restrict the display of such annotation...
Richard F. Pollock, Boris Adryan
BMCBI
2010
164views more  BMCBI 2010»
13 years 10 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
CAD
2008
Springer
13 years 10 months ago
Structure-oriented contour representation and matching for engineering shapes
Conventional shape matching for engineering models primarily considers rigid shape similarity. They do not seek global shape similarity while considering large local deformations....
Suyu Hou, Karthik Ramani
BMCBI
2007
115views more  BMCBI 2007»
13 years 10 months ago
A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector
Background: Hidden Markov Models (HMMs) provide an excellent means for structure identification and feature extraction on stochastic sequential data. An HMM-with-Duration (HMMwD) ...
Stephen Winters-Hilt, Carl Baribault
JAIR
2008
171views more  JAIR 2008»
13 years 10 months ago
AND/OR Multi-Valued Decision Diagrams (AOMDDs) for Graphical Models
Inspired by AND/OR search spaces for graphical models recently introduced, we propose to augment Multi-Valued Decision Diagrams (MDD) with AND nodes, in order to capture function ...
Robert Mateescu, Rina Dechter, Radu Marinescu 0002
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