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» Approximation of protein structure for fast similarity measu...
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KDD
2010
ACM
252views Data Mining» more  KDD 2010»
13 years 10 months ago
Fast query execution for retrieval models based on path-constrained random walks
Many recommendation and retrieval tasks can be represented as proximity queries on a labeled directed graph, with typed nodes representing documents, terms, and metadata, and labe...
Ni Lao, William W. Cohen
CSB
2005
IEEE
119views Bioinformatics» more  CSB 2005»
14 years 11 days ago
Temperature and Mutation Switches in the Secondary Structure of Small RNAs
Conformational switching in the secondary structure of RNAs has recently attracted considerable attention, fostered by the discovery of ‘riboswitches’ in living organisms. The...
Assaf Avihoo, Danny Barash
BMCBI
2007
144views more  BMCBI 2007»
13 years 6 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
BMCBI
2006
116views more  BMCBI 2006»
13 years 6 months ago
HotSwap for bioinformatics: A STRAP tutorial
Background: Bioinformatics applications are now routinely used to analyze large amounts of data. Application development often requires many cycles of optimization, compiling, and...
Christoph Gille, Peter N. Robinson
PVLDB
2010
110views more  PVLDB 2010»
13 years 5 months ago
Graph Homomorphism Revisited for Graph Matching
In a variety of emerging applications one needs to decide whether a graph G matches another Gp, i.e., whether G has a topological structure similar to that of Gp. The traditional ...
Wenfei Fan, Jianzhong Li, Shuai Ma, Hongzhi Wang, ...