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BMCBI
2010
102views more  BMCBI 2010»
13 years 8 months ago
Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
Background: Chromatin immunoprecipitation followed by microarray hybridization (ChIP-chip) is used to study protein-DNA interactions and histone modifications on a genome-scale. T...
Shouyong Peng, Mitzi I. Kuroda, Peter J. Park
RECOMB
2007
Springer
14 years 2 months ago
Network Legos: Building Blocks of Cellular Wiring Diagrams
Publicly-available data sets provide detailed and large-scale information on multiple types of molecular interaction networks in a number of model organisms. These multi-modal univ...
T. M. Murali, Corban G. Rivera
NAR
2000
152views more  NAR 2000»
13 years 7 months ago
ASDB: database of alternatively spliced genes
Version 2.1 of ASDB (Alternative Splicing Data Base) contains 1922 protein and 2486 DNA sequences. The protein entries from SWISS-PROT are joined into clusters corresponding to al...
I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Ma...
BMCBI
2008
124views more  BMCBI 2008»
13 years 8 months ago
RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays
Background: Reverse Phase Protein Arrays (RPPA) are convenient assay platforms to investigate the presence of biomarkers in tissue lysates. As with other high-throughput technolog...
Romesh Stanislaus, Mark Carey, Helena F. Deus, Kev...
EUROGP
2004
Springer
133views Optimization» more  EUROGP 2004»
14 years 1 months ago
Lymphoma Cancer Classification Using Genetic Programming with SNR Features
Lymphoma cancer classification with DNA microarray data is one of important problems in bioinformatics. Many machine learning techniques have been applied to the problem and produc...
Jin-Hyuk Hong, Sung-Bae Cho