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» Automated Performance Measurement of Parallel Programs
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IPPS
2003
IEEE
14 years 1 months ago
Sequence Alignment on the Cray MTA-2
The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
Shahid H. Bokhari, Jon R. Sauer
CODES
2007
IEEE
14 years 3 months ago
A framework for rapid system-level exploration, synthesis, and programming of multimedia MP-SoCs
In this paper, we present the Daedalus framework, which allows for traversing the path from sequential application specification to a working MP-SoC prototype in FPGA technology ...
Mark Thompson, Hristo Nikolov, Todor Stefanov, And...
HPDC
2010
IEEE
13 years 9 months ago
Data parallelism in bioinformatics workflows using Hydra
Large scale bioinformatics experiments are usually composed by a set of data flows generated by a chain of activities (programs or services) that may be modeled as scientific work...
Fábio Coutinho, Eduardo S. Ogasawara, Danie...
ICPP
1994
IEEE
14 years 23 days ago
Cachier: A Tool for Automatically Inserting CICO Annotations
Shared memory in a parallel computer provides prowith the valuable abstraction of a shared address space--through which any part of a computation can access any datum. Although un...
Trishul M. Chilimbi, James R. Larus
CGO
2009
IEEE
14 years 19 days ago
Alchemist: A Transparent Dependence Distance Profiling Infrastructure
Effectively migrating sequential applications to take advantage of parallelism available on multicore platforms is a well-recognized challenge. This paper addresses important aspec...
Xiangyu Zhang, Armand Navabi, Suresh Jagannathan