The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
In this paper, we present the Daedalus framework, which allows for traversing the path from sequential application specification to a working MP-SoC prototype in FPGA technology ...
Mark Thompson, Hristo Nikolov, Todor Stefanov, And...
Large scale bioinformatics experiments are usually composed by a set of data flows generated by a chain of activities (programs or services) that may be modeled as scientific work...
Shared memory in a parallel computer provides prowith the valuable abstraction of a shared address space--through which any part of a computation can access any datum. Although un...
Effectively migrating sequential applications to take advantage of parallelism available on multicore platforms is a well-recognized challenge. This paper addresses important aspec...