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» Automatic Generation of Some Results in Finite Algebra
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BMCBI
2010
214views more  BMCBI 2010»
13 years 8 months ago
AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number
Background: Clustering the information content of large high-dimensional gene expression datasets has widespread application in "omics" biology. Unfortunately, the under...
Aaron M. Newman, James B. Cooper
BMCBI
2007
134views more  BMCBI 2007»
13 years 8 months ago
Automatic generation of 3D motifs for classification of protein binding sites
Background: Since many of the new protein structures delivered by high-throughput processes do not have any known function, there is a need for structure-based prediction of prote...
Jean-Christophe Nebel, Pawel Herzyk, David R. Gilb...
BMCBI
2004
166views more  BMCBI 2004»
13 years 8 months ago
Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models
Background: Many current gene prediction methods use only one model to represent proteincoding regions in a genome, and so are less likely to predict the location of genes that ha...
Shaun Mahony, James O. McInerney, Terry J. Smith, ...
BMCBI
2005
94views more  BMCBI 2005»
13 years 8 months ago
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator
Background: Computational methods for problem solving need to interleave information access and algorithm execution in a problem-specific workflow. The structures of these workflo...
Alexander García Castro, Samuel Thoraval, L...
FPL
2006
Springer
223views Hardware» more  FPL 2006»
14 years 4 days ago
From Equation to VHDL: Using Rewriting Logic for Automated Function Generation
This paper presents a novel tool flow combining rewriting logic with hardware synthesis. It enables the automated generation of synthesizable VHDL code from mathematical equations...
Carlos Morra, M. Sackmann, Sunil Shukla, Jürg...