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» Biclustering of Expression Data Using Simulated Annealing
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ALIFE
2008
13 years 8 months ago
Exploring the Operational Characteristics of Inference Algorithms for Transcriptional Networks by Means of Synthetic Data
The development of structure-learning algorithms for gene regulatory networks depends heavily on the availability of synthetic data sets that contain both the original network and ...
Koenraad Van Leemput, Tim Van den Bulcke, Thomas D...
ICCAD
2003
IEEE
114views Hardware» more  ICCAD 2003»
14 years 5 months ago
A Novel Geometric Algorithm for Fast Wire-Optimized Floorplanning
As the size and complexity of VLSI circuits increase, the need for faster floorplanning algorithms also grows. In this work we introduce Traffic, a new method for creating wire- a...
Peter G. Sassone, Sung Kyu Lim
GECCO
2005
Springer
113views Optimization» more  GECCO 2005»
14 years 2 months ago
Search-based mutation testing for Simulink models
The efficient and effective generation of test-data from high-level models is of crucial importance in advanced modern software engineering. Empirical studies have shown that muta...
Yuan Zhan, John A. Clark
ICML
2005
IEEE
14 years 9 months ago
Active learning for sampling in time-series experiments with application to gene expression analysis
Many time-series experiments seek to estimate some signal as a continuous function of time. In this paper, we address the sampling problem for such experiments: determining which ...
Rohit Singh, Nathan Palmer, David K. Gifford, Bonn...
BMCBI
2007
126views more  BMCBI 2007»
13 years 8 months ago
Including probe-level uncertainty in model-based gene expression clustering
Background: Clustering is an important analysis performed on microarray gene expression data since it groups genes which have similar expression patterns and enables the explorati...
Xuejun Liu, Kevin K. Lin, Bogi Andersen, Magnus Ra...